References

 

Articles on the problem

 

1.   Campbell P.N., Smith A.D. Biochemistry Illustrated. – Edinburgh – London – Madrid -  - Tokio: Curchill Livingstone, (1994). pp. 8-9.

2.    Siemion I.Z., Cebrat M., Kluczyk A. The problem of amino acid complementarity and antisense peptides.  Curr. Protein Pept. Sci., 2004, V.5, pp. 507-527.

3.   Mekler L.B., Idlis R.G. General stereochemical code. – Priroda, 1993, No.5, pp. 29-63.

4.   Schulz, G.E. & Schirmer, R.H. (1979). Principles of  Protein  Structure. New York - Heidelberg - Berlin: Springer-Verlag.

5.   Biro J.C., Benyo B., Sansom C., Szlavecz A., Fordos G., Micsik T., Benyo Z. A common periodic table of codons and amino acids. – Biochem. Biophys. Res/ Commun., 2003, V.306, pp.408-415.

6.   Balakrishnan J. Symmetry scheme for amino acid codons. –  Phys. Rev. E Stat. Nonlin. Soft. Matter. Phys., 2002, V.65 (2 Pt 1), 021912.

7.     Taylor W.R. The classification of amino acid conservation. – J. Theor. Biol., 1986, V. 119, pp. 205-218.

8.     Esteve J.G., Falceto F. Classification of amino acids induced by their associated matrices. –  Biophys. Chem., 2005, V.115, pp. 177-180.

9.    Kosiol C., Goldman N., Buttimore N.H. A new criterion and method for amino acid classification. –  J. Theor. Biol., 2004, V.228, pp. 97-106.

10.  Jimenez-Montaño M.A., de la Mora-Basañez C.R., Pöschel Th. The hypercube structure of the genetic code explains conservative and non- conservative aminoacid substitutions in vivo and in vitro. – BioSystems, 1996, V.39, pp.117-125.

11.  Karasev V.A., Sorokin S.G. (1997). Topological structure of genetic code. – Russ. J. Genetics, 33, 622-628.

 

Articles written by V.A. Karasev on the problem

 

12.  Karasev V.A. Anti-symmetries of the amino acids canonical set. St.-Petersburg State Electrotachnical University “LETI” – SPb, 2004. – 34 p., ill., 26 ref. – Russian. – Deposited in VINITI 23.03.2004, № 470-В2004.

13.  Karasev V.A., Luchinin V.V., Stefanov V.E. A dodecahedron-based model of spatial representation of the canonical set of amino acids. – Series In Mathematical Biology And Medicine, Vol.8. Proceedings of the International Conference. "Advances In Вioinformatics And Its Applications”, – World Scientific Publishing Co., 2005, pp. 482-493.

14.  Karasev V.A.,  Luchinin V.V., Stefanov V.E. A model of the “molecular vector machine” for protein folding. – Proceedings of the 3-rd Moscow conference on computational molecular biology. Moscow, Russia, July 27-31, 2007, pp.134-136.

15.  Karasev V.A., Lucinin V.V. "Introduction to the design of  bionical nanosystems". M.: "FIZMATLIT", 2009. V. 464 pp.

16.  Karasev V.A., Luchinin V.V.  Model of topological coding of chain polymers for bionical nanoelectronics. II. The molecular vector machine and structure of the canonical set of physical operators. – Biotekhnosphera. 2009, V.2, pp. 6-12  (in Russian). Summary (engl.).

 

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